The importance of aggregated count data, which is calculated from the data of multiple individuals, continues to increase. Collective Graphical Model (CGM) is a probabilistic approach to the analysis of aggregated data. One of the most important operations in CGM is maximum a posteriori (MAP) inference of unobserved variables under given observations. Because the MAP inference problem for general CGMs has been shown to be NP-hard, an approach that solves an approximate problem has been proposed. However, this approach has two major drawbacks.

The importance of aggregated count data, which is calculated from the data of multiple individuals, continues to increase. Collective Graphical Model (CGM) is a probabilistic approach to the analysis of aggregated data. One of the most important operations in CGM is maximum a posteriori (MAP) inference of unobserved variables under given observations. Because the MAP inference problem for general CGMs has been shown to be NP-hard, an approach that solves an approximate problem has been proposed. However, this approach has two major drawbacks.

There are many settings in which we wish to fit a model of the behavior of individuals but where our data consist only of aggregate information (counts or low-dimensional contingency tables). This paper introduces Collective Graphical Models--a framework for modeling and probabilistic inference that operates directly on the sufficient statistics of the individual model. We derive a highlyefficient Gibbs sampling algorithm for sampling from the posterior distribution of the sufficient statistics conditioned on noisy aggregate observations, prove its correctness, and demonstrate its effectiveness experimentally.

There are many settings in which we wish to fit a model of the behavior of individuals but where our data consist only of aggregate information (counts or low-dimensional contingency tables). This paper introduces Collective Graphical Models---a framework for modeling and probabilistic inference that operates directly on the sufficient statistics of the individual model. We derive a highly-efficient Gibbs sampling algorithm for sampling from the posterior distribution of the sufficient statistics conditioned on noisy aggregate observations, prove its correctness, and demonstrate its effectiveness experimentally.

The importance of aggregated count data, which is calculated from the data of multiple individuals, continues to increase. Collective Graphical Model (CGM) is a probabilistic approach to the analysis of aggregated data. One of the most important operations in CGM is maximum a posteriori (MAP) inference of unobserved variables under given observations. Because the MAP inference problem for general CGMs has been shown to be NP-hard, an approach that solves an approximate problem has been proposed. However, this approach has two major drawbacks. First, the quality of the solution deteriorates when the values in the count tables are small, because the approximation becomes inaccurate. Second, since continuous relaxation is applied, the integrality constraints of the output are violated. To resolve these problems, this paper proposes a new method for MAP inference for CGMs on path graphs. First we show that the MAP inference problem can be formulated as a (non-linear) minimum cost flow problem. Then, we apply Difference of Convex Algorithm (DCA), which is a general methodology to minimize a function represented as the sum of a convex function and a concave function. In our algorithm, important subroutines in DCA can be efficiently calculated by minimum convex cost flow algorithms. Experiments show that the proposed method outputs higher quality solutions than the conventional approach.

We consider incremental inference problems from aggregate data for collective dynamics. In particular, we address the problem of estimating the aggregate marginals of a Markov chain from noisy aggregate observations in an incremental (online) fashion. We propose a sliding window Sinkhorn belief propagation (SW-SBP) algorithm that utilizes a sliding window filter of the most recent noisy aggregate observations along with encoded information from discarded observations. Our algorithm is built upon the recently proposed multi-marginal optimal transport based SBP algorithm that leverages standard belief propagation and Sinkhorn algorithm to solve inference problems from aggregate data. We demonstrate the performance of our algorithm on applications such as inferring population flow from aggregate observations.

Optimal Transport (OT) is being widely used in various fields such as machine learning and computer vision, as it is a powerful tool for measuring the similarity between probability distributions and histograms. In previous studies, OT has been defined as the minimum cost to transport probability mass from one probability distribution to another. In this study, we propose a new framework in which OT is considered as a maximum a posteriori (MAP) solution of a probabilistic generative model. With the proposed framework, we show that OT with entropic regularization is equivalent to maximizing a posterior probability of a probabilistic model called Collective Graphical Model (CGM), which describes aggregated statistics of multiple samples generated from a graphical model. Interpreting OT as a MAP solution of a CGM has the following two advantages: (i) We can calculate the discrepancy between noisy histograms by modeling noise distributions. Since various distributions can be used for noise modeling, it is possible to select the noise distribution flexibly to suit the situation. (ii) We can construct a new method for interpolation between histograms, which is an important application of OT. The proposed method allows for intuitive modeling based on the probabilistic interpretations, and a simple and efficient estimation algorithm is available. Experiments using synthetic and real-world spatio-temporal population datasets show the effectiveness of the proposed interpolation method.

There are many settings in which we wish to fit a model of the behavior of individuals but where our data consist only of aggregate information (counts or low-dimensional contingency tables). This paper introduces Collective Graphical Models---a framework for modeling and probabilistic inference that operates directly on the sufficient statistics of the individual model. We derive a highly-efficient Gibbs sampling algorithm for sampling from the posterior distribution of the sufficient statistics conditioned on noisy aggregate observations, prove its correctness, and demonstrate its effectiveness experimentally. Papers published at the Neural Information Processing Systems Conference.

The Collective Graphical Model (CGM) models a population of independent and identically distributed individuals when only collective statistics (i.e., counts of individuals) are observed. Exact inference in CGMs is intractable, and previous work has explored Markov Chain Monte Carlo (MCMC) and MAP approximations for learning and inference. This paper studies Gaussian approximations to the CGM. As the population grows large, we show that the CGM distribution converges to a multivariate Gaussian distribution (GCGM) that maintains the conditional independence properties of the original CGM. If the observations are exact marginals of the CGM or marginals that are corrupted by Gaussian noise, inference in the GCGM approximation can be computed efficiently in closed form. If the observations follow a different noise model (e.g., Poisson), then expectation propagation provides efficient and accurate approximate inference. The accuracy and speed of GCGM inference is compared to the MCMC and MAP methods on a simulated bird migration problem. The GCGM matches or exceeds the accuracy of the MAP method while being significantly faster.

There are many settings in which we wish to fit a model of the behavior of individuals but where our data consist only of aggregate information (counts or low-dimensional contingency tables). This paper introduces Collective Graphical Models --a framework for modeling and probabilistic inference that operates directly on the sufficient statistics of the individual model. We derive a highly-efficient Gibbs sampling algorithm for sampling from the posterior distribution of the sufficient statistics conditioned on noisy aggregate observations, prove its correctness, and demonstrate its effectiveness experimentally.